Output tax working
Start from the sales register and classify outward supplies into taxable, zero-rated, nil/exempt, non-GST and RCM-related buckets where applicable.
ITC working
Use books, GSTR-2B and ITC claim tracking to prepare 4A ITC available, 4B reversal, 4C net ITC and 4D other ITC disclosures.
RCM working
Reverse charge liability and related eligible ITC should be visible separately so it does not distort regular output and input tax review.
Variance review
Compare books working with portal draft or filed 3B data. Keep manual adjustments documented with remarks and supporting schedules.